Scaffold Ga0308395_1002242

Overview

Basic Information

• Taxon OID: 3300031245
• Scaffold ID: Ga0308395_1002242
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11258
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033339	Metagenome / Metatranscriptome	177	N
F036130	Metagenome / Metatranscriptome	170	Y
F052439	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308395_100224210	F036130	AGGAGG	MSEFPVFGSGDEFLHYMEQLVADIREGRVEDPPYHAVFLSNQAEAEESLAYHRAEAERLGFNPDRVVMLRDPASDAWVVLIPREQDDAAFEELWGDEGDGGIPF
Ga0308395_10022426	F052439	N/A	MVGARIPPELHSQLLEAASRLQVTPSDIIVAALRQYLERLQTPVNSPTVAGILDRLERLEQRVEALESAKPRRPVPHPPDLESLPVLELRRLARRVIGPGGDRDPTTGRHLRRADLLAALQRELGKLPDAGR
Ga0308395_10022428	F033339	AGGAG	MFRATLTKLDVGVVVATPSPRVRVLFDNRNYSTQKVILYVGCPDKESAEKLYSWLITHGYRHYDRATDTGILKPRKAERVDGMAWEIKIHRPTVELVKRFVAKDLAR