NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307970_1034957

Scaffold Ga0307970_1034957


Overview

Basic Information
Taxon OID3300031243 Open in IMG/M
Scaffold IDGa0307970_1034957 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #712
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1160
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F028986Metagenome189Y
F029619Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0307970_10349571F029619GAGGMHNNLLQYSRFPVYGESACVLKGRHGGLVGTKALGEEDGPYLLYGYDCGFVFGFLCLLLQAS
Ga0307970_10349572F028986GGAGVTITISGWLEVNLFLSEKRGGKSHYGTILLSAVSEIWRFCMASRLLLPISMETTQDPKEPVLLIALKILRHAKLCLSIIMFPFCVCWHPERMCRALSSFGQRGQVRIVESLNHIACFWLYRVPVLYFIMMHLVLKGT
Ga0307970_10349573F000607N/ANQLLMRFDNKTRKSTSNMDKFSSVVDRVYVELRGKLLNSLRIKTQFFERLQSVGVVDGATHTQKDDVESNRGSLKNVAKMSVLFLSGVQLILRSGVLTVLDLNKVDVTLGFAEISRSVLSGVGGSAGGWLYC

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