NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265325_10416295

Scaffold Ga0265325_10416295


Overview

Basic Information
Taxon OID3300031241 Open in IMG/M
Scaffold IDGa0265325_10416295 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)588
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F045709Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0265325_104162951F045709N/AFLAGIGLWVLIWTSVWKADDIAQAMHIQRWFNSARCIRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLIIYLLLPCLEKLLRQRGITTATLQ
Ga0265325_104162952F014894AGGAGGMSLRKGSATMRMSIGVPGFSVYFEHHQVKPFIKDQSKKAKDLFDERVVPAVLRGTCKALEVVANNTADA

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