Basic Information | |
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Taxon OID | 3300031241 Open in IMG/M |
Scaffold ID | Ga0265325_10074962 Open in IMG/M |
Source Dataset Name | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1691 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Seattle, Washington | |||||||
Coordinates | Lat. (o) | 47.6516 | Long. (o) | -122.3045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000530 | Metagenome / Metatranscriptome | 1047 | Y |
F016558 | Metagenome / Metatranscriptome | 246 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0265325_100749622 | F016558 | N/A | MSTTIVAPVMEVLTQTATRRSTRIRVEIPVGVISLDRTRPYGEQVMVLIVSAQGCGFRSSEALQVGTPIMLSNLPGGGSVTATVANCLPLGTDGQYFLIGASLYTHGNVWGIANAPEDWKAAAQDNPAPARATATPASAPKLTVKKAAWPYNLFSEGAEAHPGRK |
Ga0265325_100749623 | F000530 | N/A | MSEELNSTAPVEANKDSKLNDRPFRVKLRGSVLVLVRLPNKRSVRAAIHQLSTSGGVIHLEKPLDEKLEVELIFHIREATLRGKAQMLFPMWATQGWMQPFRFVDMPDADRETLDGKLKSFVGEAAKSAGA |
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