NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302324_100329837

Scaffold Ga0302324_100329837


Overview

Basic Information
Taxon OID3300031236 Open in IMG/M
Scaffold IDGa0302324_100329837 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2320
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003013Metagenome / Metatranscriptome513Y
F013483Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0302324_1003298373F013483N/AMSEEHILRYTDLAALVQMAKSRGWPTERIVREMSGGLSYSAAMNLARKAAPLLDITVSEFMRLRKNE
Ga0302324_1003298374F003013GAGVKATTKRHAKSEAELLDHATNNLLRGLKRDIQKKDGRVNYDKLRKDGYSDRLLAKLEQA

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