Scaffold Ga0302324_100018084

Overview

Basic Information

• Taxon OID: 3300031236
• Scaffold ID: Ga0302324_100018084
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13926
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007663	Metagenome / Metatranscriptome	347	Y
F010267	Metagenome / Metatranscriptome	306	Y
F052829	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302324_1000180841	F052829	GGAG	MTISRFTPPLDYLEAASRASLQSFELTRLNHAANLRREIAALIDQWIQETSEAMLARWMLDHHKSLQSSPISSTEVVRTMIDPAATLFPEPQSPMADIVPAPPRFSDPRPSMKGSIARKPQKQRQSAAG
Ga0302324_10001808412	F010267	GGAGG	MTTIPTTTAGAGVLSKQTIGLYVQIAGAAAFIAGVVLSLHHYATGICIIAGAAAFFIGKKMKAA
Ga0302324_1000180849	F007663	N/A	MASNPNYVKMQVAVDTVSWTAVVAPCDCMGVSIKNSVFVDLYIRTDSGNATTQDTISAGSIETVAAARHSGGVQDGGSGTRFYAGDTVAYLQAANGTGPAMVTFVR