Scaffold Ga0302325

Basic Information
Taxon OID	3300031234 Open in IMG/M
Scaffold ID	Ga0302325_10277095 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031234 Open in IMG/M

Scaffold ID

Ga0302325_10277095 Open in IMG/M

Source Dataset Name

Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2755
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2755

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Abisko, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0477

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F032201	Metagenome	180	Y
F032300	Metagenome / Metatranscriptome	180	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0302325_102770951	F032201	AGGA	MITVFTPSFADDANTNAQNLTAKEIVSRLSPDRFRVVMLGDGPPDPRILARENTEILRSSSHGNTARWLTRVLLSKVDIYFFPREGPLDSLFLLFRRSLGLPVALVTYIVMALDEIPVGPTMTRSIREADCVVGNSQYVSQTVQNRYGVECGTIYDGV
Ga0302325_102770952	F032300	N/A	MRVLLLHPDDEFSGSWTRQHWDSVIDLGRAPKSFYDERAAALGCPVFSIFDLAVEVEDLQIWRHLFAPGLGHVVDRFGIDWWDVIGMLLQPELQEIRLALRLADGLAGCRTLVASQPSSAAEVLSLQLGIPLQVLKRGLRQRLGDGVLRRGVAVLDLSSVQLRQVVYDKYDPHYVWRRKLAPRPAQSLRGKPSVPVVLLPTAYSNVTKTELGYAELVPEQKFLVVLARESAAVSPLPANVEAVRLASFAAKRCDKNELLQLELRWKQMEKSLQEHAEFRLAAQVGTLDEGTRWLRWGLAVRDAWLRLFETRLVVGCLCGDDTNPYTRIPLLLAAQREVPAVACHHGALDCRMAFKNLRFSTYLAKGEMERDYLERICGVGADRIRLGAASSLSRQSAMWDERAPWITFFTEPYETDLWRTEAIYREVLPRLCAVARGAGKAVVLKLHPFESARRRRRLVARILNEDDRKLVTVTDAPLSREIFQKTWCAVTVESTVAFECAAIGVPVFLCAWLRHALAGYATQYLRFGVGRRLECPDDLLRIGDWLGEAMSPADTASRLVQPATREGLLDVLCQPAPGGLRSMSKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0302325_10277095

Overview

Ecosystem & Geography

Associated Families

Sequences