Scaffold Ga0302325_10247816

Overview

Basic Information

• Taxon OID: 3300031234
• Scaffold ID: Ga0302325_10247816
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2972
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007236	Metagenome / Metatranscriptome	355	Y
F008311	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302325_102478164	F007236	AGG	MEGNMAAENLAAVINSLTPEQQESVKQFVDFLRRKGSTPSSPFLAAVEEFIDQHPELLRRLAQ
Ga0302325_102478165	F008311	AGGAG	MVLSDIASIATAISGLAVTASLIYVGIQTKQNVRHTRALVHQGTAARTTNILLGFMNPEAVKAWIEGNGGTPTPELIRQRQFYYQCGAAMVAMEDYFSQHEDGLLSDEQFSRGRATFRERLREPGLRAFWLKQRETMTTAAPRYCAFIDSLCDGEPTAPADLDLHQDGKS