NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302307_10007880

Scaffold Ga0302307_10007880


Overview

Basic Information
Taxon OID3300031233 Open in IMG/M
Scaffold IDGa0302307_10007880 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6283
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026349Metagenome198Y
F045885Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0302307_100078801F045885GGAGMNSIATSTGVVALLLCLLFWYLYQQSRQAYFLAWQIAWACYTIHYALDAFLYYRPPAPAAFFASSLFSVAMGVSIFVSTRLTRGSFRFRWYDWALALAGTAMVCIDLRVRLLASGNPMGERP
Ga0302307_100078805F026349N/AMHTTILATFLEISRTVVSTYTAGIALLVIGALTARNDVAKARGLDRVVALSNLFFALPLAVFGAEHFSAARGI

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