Scaffold Ga0170824_120417404

Overview

Basic Information

• Taxon OID: 3300031231
• Scaffold ID: Ga0170824_120417404
• Source Dataset Name: Coassembly Site 11 (all samples) - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1898
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057577	Metagenome	136	Y
F068030	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170824_1204174042	F068030	GAGG	MPIVSANSTRLKSATDMSEKVLRWFAQIAAAVIKPTRYFLRTRYPASDGECAESALEEAAAIAAATENVVANTAGVKVDIDAQIDSTASTVLDQEEIQRRRDLVRTLFNDFWSEAHDKPTAFVERLDQAEDYLNERLAETGEFWQLDAKTRVTLGLPPRANSPNNGKNRAARD
Ga0170824_1204174043	F057577	GGAGG	MRATLMKLAFAGAVSLVCSQNADAVPVDAAAMMRVASAPSTVQQAQFYARPTRHGVIKCYREFVVGRPVCRHFHRWWW