Scaffold Ga0170824_116339934

Overview

Basic Information

• Taxon OID: 3300031231
• Scaffold ID: Ga0170824_116339934
• Source Dataset Name: Coassembly Site 11 (all samples) - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2485
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009039	Metagenome / Metatranscriptome	324	Y
F011703	Metagenome / Metatranscriptome	288	Y
F084557	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170824_1163399341	F011703	AGGAGG	MSHHSISMKLLCTAGLVGLLAAVPGARTGSAQNVNDMVRTLNNVLNPGDAQRLEDQARRNGRPQEERYWRDYRAGLDSPDRNRRDYGRTGDRTDYRDRGDYRSQRDEGYQGDSSTRRDYRDQRDYRYDQR
Ga0170824_1163399342	F084557	GGAG	VTHDAVTHDVVLARGDGSKRKFRVYGRPMPGRGDTITLPVDGQLIRARVTVSSDKPETDQSVDAELVELVE
Ga0170824_1163399343	F009039	GGAG	MRSTFAFTTALLLLLGIGVANAADPTQLAATGGFLLGNAHRCGVAVERVEHAGKVIHGFIAAAAKDSGEAAAADSRFAAIFLATSLPDQDPDAFPSCAVVIQQFERLERHHEQAGLNRGTRAASPAF