Scaffold Ga0299913_10403394

Overview

Basic Information

• Taxon OID: 3300031229
• Scaffold ID: Ga0299913_10403394
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1355
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013841	Metagenome	268	Y
F033376	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0299913_104033941	F033376	GGAG	MKSELENKIEARVAAAFGDIIPAPESKAGQEILKGAQELVRAVWVGKIYAALPSDKTIISEYFLDAELEQFLNEAVEECHRQICLIAQRAKEEFS
Ga0299913_104033944	F013841	N/A	LLSTLFKKVPVRTTKQRATLCKRCGARIYSLSYLKAHLEAHDRKTH