Scaffold Ga0307928_10186407

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10186407
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1118
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F081762	Metagenome	114	N
F096206	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_101864071	F081762	AGGAGG	MTYDIEKAETLAERFEMNRFNLLDALASNMRETPLTGGGVCGNSYIALSLIDRGLADTRAIAIGNALEKGDVSGLSWAVLDCDSHNFPLLVKLEPRLFEMLLSDGSIEGDHPALIERLNEVIK
Ga0307928_101864072	F096206	AGGGGG	MSFTVDFGNIRETDKEGRKNLNSLQYWIGSYMMAIGMDEITDKNYLEVYSRLRMLDTSILALGNDGDGEPWMHLDMLQRLIGAKFSGRHINVESRAKFSTRMLRNTISAVERKVAKESQEVA
Ga0307928_101864073	F009045	GGAG	MNKLNEVFTPSRVPRGNRHIVKGQIVQGDDYQVEDVRRAFWSNPDGTHSAHLFRLERGVVVDRVTVDSWDGESLNQFALRTETIILGGVK