NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307928_10142142

Scaffold Ga0307928_10142142


Overview

Basic Information
Taxon OID3300031227 Open in IMG/M
Scaffold IDGa0307928_10142142 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #232
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1346
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008895Metagenome / Metatranscriptome326Y
F082327Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0307928_101421421F008895N/ATVNNLNSNGLTDDAIVRIDNNVPFGYLIFYKPTEAHRFLVGKQTITSIQFTLTDTQGNDLNIFSNDAQITLKIEYMYKPEMRSFEEGTLNYELRKLAEVTKDNADLSGVYNPETNEFIRE
Ga0307928_101421424F082327N/AMYYYTIMASSVDAMAESLNYPNMKRRAVASRSYRVKISPSNGQTFTDGQT

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