Scaffold Ga0307928_10053407

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10053407
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2555
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003552	Metagenome	480	Y
F012281	Metagenome	282	Y
F061579	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_100534072	F012281	N/A	MLSNHDIDVLVEKLNIPNFKGCYYKDKLKSVQPNSSYIINLNSEMDEKGDRNTGSHWCCLVTDDMKQCIYFDSYGEREPNEIRNLLKCNQYTIGHTSKNIQSLMSNLCGFFCLSFIYFLSVSKYRTKNIIHDASIYLDLFEDLDKVDDVYKNEFVLSLFFTDTKSKTLLLGNNNIGMSKENKIDNRFSIEDKKLRH
Ga0307928_100534073	F061579	N/A	MNITLDLSKGQLSKLRNGHGIRITPTMLGSGVEMIIDPMTFHNMMKKLDKSKGVVIKMGSNEIEMNKMEGTGLFAGAGNKSGKISRVKKAGKWTGYVDDTARMGIDTGAYGYKKYQEAKNPIQSGVKKMFGFGDMDMEGGKISMAAIKQSYNKNVKNTKLGKALKETAEKGLGQVYDTGTNMIGNTRYLGGVADALKKGKAKNVSKLVGMSGLGLKLQGGEMKDARYRRPITMGNGMHMGGGMCSMCGAGNDKFLFSDQAL
Ga0307928_100534074	F003552	N/A	NVNVFDDGLPQLMAHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGINGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD