Scaffold Ga0307928_10026784

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10026784
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3888
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_100267842	F075727	N/A	MKLQNKRAWVARDFIIAMLIFSGSIALYVLMVGSIANDYDNPNIIDTNFSDKFDQFAEDTDRAGEMWNATTSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGAQLASFGTFFGIPSTISYVFMTLLFGILTVSIIFIIISSVRSGKEL
Ga0307928_100267843	F077915	AGGA	MTYFVTPTGNDTAGFYELFKFVAVSGTNGLLWPVMLLVIWVVSFMAFKNYSTSRAWTFASFFCSILGIMMAVLDYMAPVWMYLCIILTVIGFVWLKLEAN
Ga0307928_100267845	F007072	N/A	MRSILQKKAQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGDALTDGSVAQNVTDDLNTEIANNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTTRV
Ga0307928_100267846	F007072	AGGAGG	MRSILQKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGDALNTDGANSTAYNVTVDLNTEISNNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTSRV