Scaffold Ga0307928_10018193

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10018193
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4883
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F075591	Metagenome / Metatranscriptome	118	Y
F078142	Metagenome / Metatranscriptome	116	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_100181932	F075591	AGGA	MQDLAKLSELAEAEIESLRADGIDLTPAEIVEINALGWAVESPETRRLLARGAPVAIGGVYLWPMSLYAQDWFDRVGCEMGGLRRQTYAMAYAMAHGRDEGEPLAMSGRKAELIALVWGLRLKCTFSELNVAVSQVLQQDEDAEQPPSETGGMTMGDFSAFLASACGGDPDFWERRCAAGYTHAVLDALVRQNSAEGMKTLADPRLKSERALGWKIECIKKSRKEPEPT
Ga0307928_100181933	F098516	AGGAG	MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVPRAQSRADAQDENEDIAASAYSGNSAEEITEVSCTYALKSGTLDLSDLVIGELAVQIMAESLALTTANGGWPQITVTGYLGLETITAPTDYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTSDFVRVSDAPAWELATVLTDSPFLAEVTQDPGEDQGQAAWHTAAGAASFNLARLAS
Ga0307928_100181934	F039448	AGAAG	MNTTKAIELAMAETLRKYAQMGEDVTIRAWQSLEADGSWKKDPDRKFPMIDVRCSPPGHDDNESTLQVQCAILMGTNTDDDKSHAFIASMYEAVQGVCDTLFAQYKTGVFTGEKLAYFLARVVAETSTDAFQFGGLTFGDGLAPADDGGINMIGITMIVHYGRSDF
Ga0307928_100181936	F078142	GGA	MSFEIEAFNSIYASITIARCKIRIGRTVIAKALCSGIGTLRENTDEGQLGSIDANVRLLATDEPDGEIKTGTVIEILQNGQDTKTGWVKARVGGRFPVGGLTRLALEAVNE