NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307928_10008061

Scaffold Ga0307928_10008061


Overview

Basic Information
Taxon OID3300031227 Open in IMG/M
Scaffold IDGa0307928_10008061 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #232
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7706
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046685Metagenome151Y
F064414Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307928_1000806112F046685N/AMQQQEIPQQQYQSVPVSSDELYANAVQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVFTRDWEKIDPDSPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMSQAINYVADELDGNSSIYNLDNNYTERTRIGHIMLNSMFFTLNRSLNGEEAKRMWKAMSLSDNLTNDDKGKFSEALKFWK
Ga0307928_1000806114F064414GAGGMGMSDITSKMPFFGSSGGGGNIIYIIIGFAVLLVCGFGLWWFLKKRKHWNIKVEFKIPRNIKKVRTKEGNIKIIGTLNKEWGKGFYDALKGSVFIKRKGKKAVAMKPFDIKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDIDGSEGALVQAVIDTSESKSWKNTFEREAKMTYSIKNWIAEHGALVAMGLVLLMNLIGFSIVIARMPK

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