Scaffold Ga0307928_10005714

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10005714
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9278
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F064414	Metagenome	128	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_1000571411	F075727	N/A	MNKMNKKGWVARDFIIAMLIFSGVLAIFVVMIGSIANDYGNTEIIDSEFSDKFDKFSEDTSRAGEMWESATSEGGLSLVGTADLLFFSTFRVISLVFTGVVSVGEQLAGFGEFFGIPSEISSIFMVLIFTILTVYIVFIIISSIRSGKEL
Ga0307928_1000571412	F077915	AGGA	MAVTDYYVAPTGNETSGLFEISKYVGISATAGLFWPVMLLVIWVVSFLGFKQYSTSRAWTFASFFCSILGIFLTVLNLMAPVWMYLCIFLTLVGLVWLKLEAN
Ga0307928_1000571414	F007072	GGAGG	MEKLSKISSKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTEDSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV
Ga0307928_100057146	F064414	GAGG	MGFGNITDKLPFVGGAGMGEGYIYIIIGIIVLGLCGFGLWMFLKKKKSWNIKVEFKIPRNIKTVKTKDGHMKIIGTLNKEWGKGFYDAAKGVVFVKRKGKKGVAMKPFDIKQYLSTGNILTVVQTGIEDYRPIRDESYIRLKDINGKEGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLFMNLVGFSIVIARMPK