NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307928_10005714

Scaffold Ga0307928_10005714


Overview

Basic Information
Taxon OID3300031227 Open in IMG/M
Scaffold IDGa0307928_10005714 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #232
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9278
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007072Metagenome358Y
F064414Metagenome128Y
F075727Metagenome118Y
F077915Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0307928_1000571411F075727N/AMNKMNKKGWVARDFIIAMLIFSGVLAIFVVMIGSIANDYGNTEIIDSEFSDKFDKFSEDTSRAGEMWESATSEGGLSLVGTADLLFFSTFRVISLVFTGVVSVGEQLAGFGEFFGIPSEISSIFMVLIFTILTVYIVFIIISSIRSGKEL
Ga0307928_1000571412F077915AGGAMAVTDYYVAPTGNETSGLFEISKYVGISATAGLFWPVMLLVIWVVSFLGFKQYSTSRAWTFASFFCSILGIFLTVLNLMAPVWMYLCIFLTLVGLVWLKLEAN
Ga0307928_1000571414F007072GGAGGMEKLSKISSKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTEDSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV
Ga0307928_100057146F064414GAGGMGFGNITDKLPFVGGAGMGEGYIYIIIGIIVLGLCGFGLWMFLKKKKSWNIKVEFKIPRNIKTVKTKDGHMKIIGTLNKEWGKGFYDAAKGVVFVKRKGKKGVAMKPFDIKQYLSTGNILTVVQTGIEDYRPIRDESYIRLKDINGKEGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLFMNLVGFSIVIARMPK

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