Scaffold Ga0307928_10002415

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10002415
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14374
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054439	Metagenome	140	Y
F085177	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_1000241513	F054439	N/A	MKQMAYARRLLGGEGVSKKQIALDSGYSPNVSNSIKTHIEDKRGFNNAMTKLAMDSNNLALAAMHEFKARGFKEFSNSELTGALNAIGNAWAKFNQATAPLEQKPSRNKLKNVVLQNIENQTFIQSSTETERKPNPPVTDVSPEADF
Ga0307928_100024154	F085177	N/A	MTGTINDYAVIVNNVVKHIAPKVSPTIRAEYLDFMHKVDTSERIYSDVGVTGLGMAEIIPDGGIGASDAPIQGYSKNYVQMHFTKKVRLTFQSNFFLFEGAASKIKGTVKAKVLEGKNAIQHAKNYLAQSLLAQGFDTSFTWTPINNVGTPQPISTIGADAVEYWSQAHPREDGGAAWSNVIVDGATDSPVFSYSALLAARRLHSIKKDGRGMPLISDLDTLVARKGSTTAQTAKTIKATIEKGLAPTQSNIFNNAPATDAFKCVELSPYQGLAMDGLMWGMFDSKMMTEDFGFLYIEALPTRAEPAVVDLLGNQDLVMNFNSIAVMGASDLRGWMWSAGDGSTV