Scaffold Ga0307928_10000603

Overview

Basic Information

• Taxon OID: 3300031227
• Scaffold ID: Ga0307928_10000603
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27115
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (63.16%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053745	Metagenome	140	Y
F064378	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307928_1000060350	F064378	AGGAGG	MAITVTNINVKGAVVRIGGTVIADTGNLDWFDVSPAGTDVGCTTGGVTVTYSLETSDIFCDQSSVPVDVAITGETATVEFSMLESTAENLKLVLSDFASSEDESGVAYWLGVGGINTINFQPLELEITDNDTGYLTTWSFFRCVPGGIDANFERENPTAFGVTFTAYADTTHSSGKQLFQVRQNKV
Ga0307928_1000060352	F053745	AGGAG	MTTKLKVEHSSKGKLIKKPSYLIELEAKWKRWTKIDDPEAFEAIKDLSGDLWSELRKLESQLCTECENRNLPEDFKEFCKAKIRDTWRDIIGHQKIGLDKLCIVIRKHLKEEK