NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307942_1083602

Scaffold Ga0307942_1083602


Overview

Basic Information
Taxon OID3300031225 Open in IMG/M
Scaffold IDGa0307942_1083602 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #175
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005583Metagenome395Y
F019933Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0307942_10836021F005583N/AMYNMSPPLTINHLKILNNEFYKNLNFFGRDKLFNMLRTKYGDESPSRRQISDWLKLQEVNQLYAPSKGKPKTFKSSMTTPNKILAIDLVNMEKFQVRGYKYLFNAVDM
Ga0307942_10836022F019933N/AMPEPKFLTDNIPHEYILLPNVKHAFDPEGVGLNWSLEECEFKKGSNQYISICYYVKDTNYAVVDIDTDDYSLDQLFEDTEIDSMWVKGNTTGFHVWVEFPNGKPDAYRRTEQNCSNLCKMDFLGEKVWERLDKAWTGEFPCHIHAEQFEKCFDMQKFAPKKKTEKKTHESTGDKELLTKMVDLIHMKYCYEMG
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