NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307942_1002053

Scaffold Ga0307942_1002053


Overview

Basic Information
Taxon OID3300031225 Open in IMG/M
Scaffold IDGa0307942_1002053 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #175
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16273
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034412Metagenome175Y
F089594Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307942_10020531F089594N/AVASWLVGAGSERQVIAVVCGSGIGDVLIESWFLFVWLDTLCE
Ga0307942_10020533F034412GAGGVILEEAGDVCGSKLSMSKTEDRLGCPLLVDGSVCVGGGPLIKLFVMGCLWCVAERGCGAGVTGLHTTALMEKLGILVA

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