Scaffold Ga0307942_1000965

Overview

Basic Information

• Taxon OID: 3300031225
• Scaffold ID: Ga0307942_1000965
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #175
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22033
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002411	Metagenome	561	Y
F025890	Metagenome	199	Y
F028986	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307942_100096517	F028986	N/A	MGVTSTKSGRLEVNLSLSEKRGGKSHLATILLSAVSEIWRFCMVIRLLLPISMEKMHDLKEPVFLIALRIMRHAMLCLSVIMFLICVCWHPEKMCRALSTCGQSGQV
Ga0307942_100096518	F025890	GGAGG	MGHVCCMDMIMNLCLVFYVFFCKPVDVVKGTPLRACCFDGGVYKVGVGGG
Ga0307942_10009656	F002411	GGAG	MVVRSLPPKSMEAMHDPKESVFLIALRIMRHAMLCLSVIMFLICVCWHPEKMCRALSTCGQRGQVRLVESLNNTACF