Scaffold Ga0307982_1028201

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307982_1028201

Scaffold Ga0307982_1028201

Overview

Basic Information
Taxon OID	3300031224 Open in IMG/M
Scaffold ID	Ga0307982_1028201 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2999
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.457	Long. (^o)	78.1911	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012281	Metagenome	282	Y
F018328	Metagenome	235	Y
F018841	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307982_10282011	F012281	N/A	MLSNYDLDELVIKMGINNFKGCFYKDTLKKIEPSCSYIINLNSEFNEKNERNAGSHWVALMTDDLKKAIYMDSYGEKEPNEIKNLLKSNQYKIAHTSKNIQSLMSNLCGFFCLAFIYFLTVSKYRTKNIINDASIFLGLFEDLDLVDDIYKNEFVLSLFFTDKKSKKLLFDNNNIGMNKDNKIDNRFNIEDKPLSL
Ga0307982_10282012	F018841	N/A	MNVSLDLSPGQLSKLRNGHGIRVSRAMFGSGVDMIIDPMTYNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGSGNKSGKISRRKKAGKWKDFAVETARDGIDLGRYGYEQYQAARNPLKSEGKKAIKGLSKMFGGEMDGDVMEGEGIFDDIKKGYNRKVKKSALGKALRDSAGSAIGDVYDRGAREIGKNKYGKPISQYMRNKKGSNVDKLTGYTGLGLRVAGDGRMKSAVVKRPSIAELKRMRTAVEARPAVMPRGKIDPEEMKRLMAKHGKGLRMAGGECEMCGGSMNDKFLFADIAL
Ga0307982_10282013	F018328	GAGG	LRRKSRARRHRAAAEVVGVARDGERQWIQAPWKSPTTVSRWEKRWCRRCLRNTHTQKTVGTLTTGGVGKMVELHVQAIQMLPDIESNYAQNHLRVVSYNDYYQFTLKNVASGESFNHLVSNGISNLKAVLIIPLLNTLNNNVNLFDDGQPQLLAHINNFNVLVGGSNVLHADARYTYQSFYNEFFNEFGVNGNQSSGMGSNLIDYKAWFKKPYYYVNCSRDPMEQQNAYRSLQIKGTNSSSLAVDYMIFAVYEKNFSLDVISGNINKID

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