Scaffold Ga0307982_1011239

Overview

Basic Information

• Taxon OID: 3300031224
• Scaffold ID: Ga0307982_1011239
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6291
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012163	Metagenome	283	Y
F017719	Metagenome	239	Y
F018841	Metagenome	232	Y
F028317	Metagenome	192	Y
F068557	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307982_10112391	F068557	N/A	MKITENSSQEQELAISFKSSALDIFKTLSLPNEDRGTDGLVYLNKVYNKYVNLVENSSILNQMNKKDNLLVIDPKLLNVDDGSSISSNNSNPIRTEENEL
Ga0307982_10112393	F028317	N/A	MLSNFDIDELVVKMGINNFKGCFYKYTLKKIEPSSSYIINLNSEFNEKNERNAGSHWVALITDDMKRGL
Ga0307982_10112396	F018841	N/A	MTAPQGVAVFARRRSTHRPTFKIFTLIYFRRFIKIKFNIKFFLKFKSYYKSIMNVSLNLSPGQLSKLRNGHGFRISRAMFGSGVDMIIDPTTFNNMMMKLERGKGAVTSMSGAEIEQNNMEGTGLFAGSGRKSGKISRIKKARKWRDFSDETLRKGIDTGRYGYEQFKEATDPVGSELKKSGKKAIKGFSKMFGGEMEGDEMEGDGFFKDIKKGHNRKIKNSDLGKALRESARSAISDGYDRGAKELDKNKYGKPISQYMSNKKGSNVKKLTGYTGLGLKLAGDGRMKSAVVKRPSMADLQRIKSAVEARPAFMSRGNFDPEDIKRLMAKHGKGLRMSGSGTCEACKGSGMMNDKFIFSDIAI
Ga0307982_10112397	F017719	N/A	MLKDIHPLFEVMPISKSLNFKIQIFWNNSVATATHNGTNWIAQSSQFRVYNGTLPLMLNNVADGFNGATAGTLRASVYVGDTCYDTTQKTAGTLSTGGVGKQVELHVQAVQMLEDIESNYAQNHLRDVSYHDYYQFTLRNIAGEGKGSFNHLVSNGISNLKAVLIVPQLSSLNNNVNVFDNGLPQLMGHINNFNVLVGGSNVLHADTRYTYQSFNNEFFNEFGINGNQ
Ga0307982_10112399	F012163	N/A	MSSVSDHIQLMKSQEKQYDSVFNKREWLYINDTVTQNDQGTSIIETISLSNNSKFLDYNSAYLSVPLLITFFKRSYK