NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307982_1011239

Scaffold Ga0307982_1011239


Overview

Basic Information
Taxon OID3300031224 Open in IMG/M
Scaffold IDGa0307982_1011239 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6291
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012163Metagenome283Y
F017719Metagenome239Y
F018841Metagenome232Y
F028317Metagenome192Y
F068557Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307982_10112391F068557N/AMKITENSSQEQELAISFKSSALDIFKTLSLPNEDRGTDGLVYLNKVYNKYVNLVENSSILNQMNKKDNLLVIDPKLLNVDDGSSISSNNSNPIRTEENEL
Ga0307982_10112393F028317N/AMLSNFDIDELVVKMGINNFKGCFYKYTLKKIEPSSSYIINLNSEFNEKNERNAGSHWVALITDDMKRGL
Ga0307982_10112396F018841N/AMTAPQGVAVFARRRSTHRPTFKIFTLIYFRRFIKIKFNIKFFLKFKSYYKSIMNVSLNLSPGQLSKLRNGHGFRISRAMFGSGVDMIIDPTTFNNMMMKLERGKGAVTSMSGAEIEQNNMEGTGLFAGSGRKSGKISRIKKARKWRDFSDETLRKGIDTGRYGYEQFKEATDPVGSELKKSGKKAIKGFSKMFGGEMEGDEMEGDGFFKDIKKGHNRKIKNSDLGKALRESARSAISDGYDRGAKELDKNKYGKPISQYMSNKKGSNVKKLTGYTGLGLKLAGDGRMKSAVVKRPSMADLQRIKSAVEARPAFMSRGNFDPEDIKRLMAKHGKGLRMSGSGTCEACKGSGMMNDKFIFSDIAI
Ga0307982_10112397F017719N/AMLKDIHPLFEVMPISKSLNFKIQIFWNNSVATATHNGTNWIAQSSQFRVYNGTLPLMLNNVADGFNGATAGTLRASVYVGDTCYDTTQKTAGTLSTGGVGKQVELHVQAVQMLEDIESNYAQNHLRDVSYHDYYQFTLRNIAGEGKGSFNHLVSNGISNLKAVLIVPQLSSLNNNVNVFDNGLPQLMGHINNFNVLVGGSNVLHADTRYTYQSFNNEFFNEFGINGNQ
Ga0307982_10112399F012163N/AMSSVSDHIQLMKSQEKQYDSVFNKREWLYINDTVTQNDQGTSIIETISLSNNSKFLDYNSAYLSVPLLITFFKRSYK

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