Scaffold Ga0307981_1077827

Overview

Basic Information

• Taxon OID: 3300031223
• Scaffold ID: Ga0307981_1077827
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #987
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1026
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002382	Metagenome	565	Y
F007407	Metagenome	351	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307981_10778271	F002382	N/A	VTVQPRDRSVSIAASPVDEGTDPPDWPNIRVSVAIPDVTIDTRMLSMLVWVSAVPINASPKLPPFILSKALAGKLVRLVQLFQARKKRVPEDVSIRGKLVRLEQRSHANVKSVPDDVSIGEKLVRLEQSCH
Ga0307981_10778273	F007407	GGCGG	MTTRDTRRAFLKLLDDTWPGVRSEFVAAMRQARAGVDMKALEAAIARGDVDGAFRALRFDAADLFKTDTAITAAL