NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307981_1049754

Scaffold Ga0307981_1049754


Overview

Basic Information
Taxon OID3300031223 Open in IMG/M
Scaffold IDGa0307981_1049754 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #987
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1426
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014668Metagenome261Y
F030992Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0307981_10497541F030992N/AMNIALNLSSAQLSKLRNGHGIRINPTMFGSGVDMIIDPMNYNNLLKKLERGKGAIMSMAKNELEENEIQGTGLFNGSGNKSGKISRHKKAGKWRDFSNDTARMGIDTARYGYEQYKEATNPLQTE
Ga0307981_10497542F014668N/ASPVLQYSVKATIYLKDIHPLFEVMPISKSLNFKIQIFWNNAVATATHDATNWTGQTSQYRAYNGTLPLLLNNVSDGFDSASAGTLRASVYVGDTCHDSTQKGFTGVSTGAVGKQVELHVQAVQMLPDIESNYAQNHLHDISYHDYYQFTHRNIAGGETFNHLVSNGISNLKAVLVIPQLSSLNNNVNVFDDGLPQLMGHINNWNVLVGGVNVLMQDSRYTYQSFNNEFFHESGINGNQSPGLGSSLIDYKSWLQKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSLLTMDYLIFAIYSKSFKLDVISGNIEKVD
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