Scaffold Ga0307981_1020921

Overview

Basic Information

• Taxon OID: 3300031223
• Scaffold ID: Ga0307981_1020921
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #987
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2786
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022152	Metagenome / Metatranscriptome	215	Y
F034108	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307981_10209211	F034108	AGG	MRFNPQIRKAIYAAAAGLVPLLVIAGIVTGEQSQQILSSVAAALAFFASVMAVKNTEVNNPEEYEDVTEGIEPPQIPGV
Ga0307981_10209212	F022152	N/A	MSEQIPRSSTQQQLLLKLVGDMADVKAGFKMLQDHEDRIRELEKARWKNAWITAFASAALTAFAVTVVSQVAI