Scaffold Ga0307948_1060870

Overview

Basic Information

• Taxon OID: 3300031221
• Scaffold ID: Ga0307948_1060870
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #280
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1604
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035579	Metagenome	171	Y
F047531	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307948_10608701	F035579	N/A	YVILKIYLTYGVVRPSELIDMQITDTDEGGDKFNYINVQTKKIVINNHKNDRKGTKVIDITDDKLNEILCKGLNNHLVTNQNGDLYSSSSSFGKMFKSKFNDYNPYDLRKCVSSLAIHEGNTEKINMLEYNQGHCLNTILKNYNMYNKVDA
Ga0307948_10608702	F047531	N/A	LLVNLNECEGKDTFDFEGKIKSFITEDTITVNPKNVRPYSIANMARTVITTQKPNPVPIDVKTKDRRYVVYKTTDKYLKMSSKFWTQLYNHLRKSETMQALYQWFMKFDLTDFDWIKRRPLTEAYKEMCNLYSPIEALFFEEFYDNETWVGLEYKGGKNDIISISMQDLFEAYEGFCRRHRFLKDDTKATSSRAFISKLVDLEIPMTRLKTDGVRCVRISPKEVYDYIDRKQWINGFDHEKAELEYADTGDDGEEGYFS