NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307973_1002677

Scaffold Ga0307973_1002677


Overview

Basic Information
Taxon OID3300031219 Open in IMG/M
Scaffold IDGa0307973_1002677 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #782
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6073
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001894Metagenome / Metatranscriptome621Y
F003482Metagenome / Metatranscriptome484Y
F036509Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0307973_10026772F001894N/AMSESAKIANIHYIYQDRPNKQRANKMAKRKLGRLGYELDEANTGKDVLTAKRGNNVHINYSGTNINSPRDIISDAALATGVQRINPQFTERRQKTRNIMRQYGDDNNFSLGGHSLGGSIALNTLSQSKSIRDRTKVAHVFNLGYTKAFHESIKPTDKKIKRQLNDKVNIHRVKGDLVSAHANKETAFGNLFEYTHKDNNSDLSDKHSLDTFMEKDL
Ga0307973_10026774F036509N/AMSLHQMTQKLTPQQANVIPAGKFIYTDETFLVKPPIDPKGEAFPRQGKELVPAHFSYAHRNPDFTPIAGGVPIAMNFNTYIYNAQTGYV
Ga0307973_10026779F003482N/ANTYNLIKRDTEYIPATEELNDANKGQWVEHDDNDFAKAFNGLLDYTNDDEEFDNLDWNSVNYEVYGPDYYQERFPGFADEVYEILAKSTEPESKIVDHRVPPLKITNGEFIVKFD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.