NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307940_1106146

Scaffold Ga0307940_1106146


Overview

Basic Information
Taxon OID3300031217 Open in IMG/M
Scaffold IDGa0307940_1106146 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015962Metagenome250N

Sequences

Protein IDFamilyRBSSequence
Ga0307940_11061462F015962GGAGMSRHTEYGNSPVGRLISGDPWTKQTTDANNRPIPEDKQSFWFAVAIEKNAPGMNEMLGLMFKAAQAGYGQAPQIMAQINMGLAATAFSWKIADGDEMRANATTGEQELRWKHGQGCWVVKFSTT

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