NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307940_1023907

Scaffold Ga0307940_1023907


Overview

Basic Information
Taxon OID3300031217 Open in IMG/M
Scaffold IDGa0307940_1023907 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #124
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1465
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093010Metagenome106N
F096721Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0307940_10239071F096721GGAMSNNLPSVPPTSDYERMVGSIFSFIEDGIPHKALFDLTVIAQTAKEFEAGMNASVELGDILNDHYDTYEMEPDDGPYDEIEDSIWGTEGDDFDPPEDWFGEGGPFGPYDED
Ga0307940_10239073F093010AGGAGMQPYTHLLALARRAIPWFLVSFLLMPLAMPASAQTSCGPIEAIHTALTDQYGEQFYESRADPSAPGGVAELWINHRTGTFTVLVYPQPGVACLVQTGQSAKLISYAA

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