NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307980_1037255

Scaffold Ga0307980_1037255


Overview

Basic Information
Taxon OID3300031216 Open in IMG/M
Scaffold IDGa0307980_1037255 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1060
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1100
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060489Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307980_10372552F060489N/ASGVSNSEVWSQVNGEWPLILHTDTNRAQFGGQLDCDLDAFHYSAGDGGITKGTNADISWTSTRRGSTIQNGDSFRPKYTGKYSITLCLFFTAGSSGRVTLGLKLNGSEYNLNGGSSGTYIISALSANSDVNMFTGNMIVDAVAGQDIKAYVKNGTLRYYGSVSYLAGYYIGNT

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