NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307980_1025944

Scaffold Ga0307980_1025944


Overview

Basic Information
Taxon OID3300031216 Open in IMG/M
Scaffold IDGa0307980_1025944 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1060
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1390
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007247Metagenome355Y
F008116Metagenome338Y
F079423Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0307980_10259441F007247N/AMKKFKNYFKRTRHHLHAIVGITGGFLACLSLSWIWLGFRNLEALDK
Ga0307980_10259443F008116N/AMRLGFGLGLEYSKLSGGGSGFDPQAQAQITRIQNAGGTIEDVNVIDADIKFLKSIGLFANLKYAVDPRAGITQRVDGSDTFASKIFDYSGSDADTANATGSAQPKKGILNGITSLDFDGVDDRLTDEDTVTFLAGENQFSIAVYAQDFDNSGGFGMMVDKFSPDSGGKQFGRRQDDIAILATGTLAFTPYQNVQILASGTSTTSNVVTGFVNSVQVLQETRIVNHIGKSLGCIADRPALFFAKGQFQKNWDFDILPTPSQAAAITDYLQNQFNIS
Ga0307980_10259444F079423N/AQFGVRQLATGETSTTGEKFMAVYANVDSDFTVASTSGGDASFTVKLLAGGSLVGPYKNITGLTGDILCFKSDEL
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