Scaffold Ga0307980_1000885

Overview

Basic Information

• Taxon OID: 3300031216
• Scaffold ID: Ga0307980_1000885
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1060
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12859
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008123	Metagenome / Metatranscriptome	338	Y
F009218	Metagenome / Metatranscriptome	321	Y
F009786	Metagenome	313	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307980_100088511	F009218	GAGG	MLQKTLVKMFDGVFFLKDEPESATGASWKFRRKLIFGSYRLGFAMIIFGAVTFLVDQWGVGVTLITGGVSLILIITTAYTVSASWQDGRNNNQDWTNGDV
Ga0307980_100088513	F008123	N/A	MAEEGTSVRITNFQVYEKLMEVNENQIEMFAELRGLKYLPEKVANMETRLAKVELIARLVYGVYGATLGAVAVGLVSLLRG
Ga0307980_10008852	F009786	AGGA	VNLQFSDLVQKLEAERNDISYRSHFTKPEVKVITKTLKVIPERFKKIYFHAGRYAAGDRDKLASEAWSEYEKQEDV