Scaffold Ga0307935_1017050

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307935_1017050

Scaffold Ga0307935_1017050

Overview

Basic Information
Taxon OID	3300031215 Open in IMG/M
Scaffold ID	Ga0307935_1017050 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #92
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1467
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.457	Long. (^o)	78.1911	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002402	Metagenome	563	Y
F008348	Metagenome	334	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307935_10170501	F008348	GAG	MNINEHKDYSKPYWVAKYEDNSVIKYGEITEGSILNTKMDIFTFSEKEDMI
Ga0307935_10170503	F002402	N/A	QHILMYYKGTKTKCEDYNTKVTLGENYQGSTDSWSNVISNQNRKGFAILKHENYESKMTLIDKIPDSWYNNLEI

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