NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307935_1015866

Scaffold Ga0307935_1015866


Overview

Basic Information
Taxon OID3300031215 Open in IMG/M
Scaffold IDGa0307935_1015866 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #92
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1539
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F008116Metagenome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0307935_10158662F001408N/AMKKFKSYLKRTRHHLHAIVGITGGFLASLALSWVWLGFRNLDALDKAILFICPAFVIGYAWERYQGIINKMDILVSGIAISTGVYLGGLLF
Ga0307935_10158664F008116N/AVINNIGWGQGANNDIGWGSIYDKSNAGETLLSGGGIDPQAQAQITRIQNAGGTIEDTSVIDADIKFLKSIGLFANLKYAVDPRAGITERVDGSDIFASKIFDYSGSDADTASATGSAQPKKGILNGVTSLDFDGVNDRLTNTNTVSFLAGEEMFSVAVYAHDFTNSDRFGAVIDKFSPDEAGKEFSKRDEFIRIFANQNVNNNTYQNIQLIASGTASTSNVLTGFINNSQIMQETNTINYVGKTIGSIRGIRIDSFFAKAKFQKNWDFDALPTPSQAAAINTYLTNQFNIS
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