Scaffold Ga0307935_1011418

Overview

Basic Information

• Taxon OID: 3300031215
• Scaffold ID: Ga0307935_1011418
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1915
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008123	Metagenome / Metatranscriptome	338	Y
F009218	Metagenome / Metatranscriptome	321	Y
F009454	Metagenome	317	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307935_10114181	F009454	GAG	MYEEIEAAIAEVQQPRSRFQLERFVTGSHATPEMQYYQTCLELQDMIYKFQVAKIGVQKAELKIKRLRETKDEMKELKAQETEIGLRQTRLAMIGAERELNDLVAIFDSFETKFTRAEIEAAQPDYWNARLTGNAKAMLMGGTSVNAAHIEAMEQAGVLENFIEEVQQSKKELGI
Ga0307935_10114183	F008123	GAG	MSEETTSVRITNAQVYEKLMEVNENQIEMFAELRGLKYLPEKVADIETRLSKVELIARLVYGVYGATLGAVAVGLVSVLRG
Ga0307935_10114184	F009218	N/A	MFDGVFFLKDEPESATGASWKFRRKLIFGSYRLGFAMIIFGALTFLVDQWGVGVTLITGGVSLISIITTAYTVSASWQDG