Scaffold Ga0307935

Basic Information
Taxon OID	3300031215 Open in IMG/M
Scaffold ID	Ga0307935_1000402 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #92
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031215 Open in IMG/M

Scaffold ID

Ga0307935_1000402 Open in IMG/M

Source Dataset Name

Saline water microbial communities from Organic Lake, Antarctica - #92

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19676
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (81.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

19676

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (81.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.457	Long. (^o)	78.1911	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Organic Lake

Coordinates

Lat. (^o)

-68.457

Long. (^o)

78.1911

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003151	Metagenome	504	Y
F004364	Metagenome	441	Y
F009587	Metagenome	315	N
F029030	Metagenome	189	Y
F029952	Metagenome	186	N
F054612	Metagenome	139	N
F075519	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307935_100040210	F004364	N/A	MTHHTERPCAAAGLTSYRYGHIMIGASSTQDALNEADRSLTHGSATVDLLEIWNARTGLYEKVTV
Ga0307935_100040215	F009587	AGGAG	MPTHLYQLCHNARRMDRHSEAELWARFKAVRPQDACAVTPARPAPHPIPEQIDAALSWAREYLTHQPETDHDLTINL
Ga0307935_100040219	F029952	AGGA	MKDLTQADVVRLFEDAGLTIDIRGSLRVTHKTGTFLYDIEDEDDSGVYIAMHQDTIDADAARAVANEKYRVEKERRLAEEEELKAAFLKTDEGKEWAEKSAFPTIDFSGGSETNFKGMFANCADLSGGKPWLT
Ga0307935_100040222	F075519	AGGAGG	MTDKNHPRFANLRTGGNMPRKRTGLIRDAISLLLIIAMCVAFYVMTP
Ga0307935_100040227	F029030	AGG	MIKTRLYRPFYILARFAEMLISSASRVLNAAVFGGSTHQTTSARAYIDGQTSEVWAKRRNLIDRMFWFMPNHCASAWAAEVDAARKTLLRAKASE
Ga0307935_100040233	F054612	N/A	RQHAWLCAQPKDIKQTRWSFLERANEEPDFPELPFRAHLAEWLLDVGPVMQGGMGMVALSHLEIQAWAANVGLQFEGDEAQWLQKMSGVYASELFGSNGKNTPQPFRE
Ga0307935_10004025	F003151	AGG	MTQFKPCDRVTHNPTGEEWILVAVYGSYVKPGGWPESHALASDCTLICGCTTTDEREACTRACEAVVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307935_1000402

Overview

Ecosystem & Geography

Associated Families

Sequences