Scaffold Ga0307935_1000367

Overview

Basic Information

• Taxon OID: 3300031215
• Scaffold ID: Ga0307935_1000367
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #92
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20925
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (84.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037979	Metagenome	167	Y
F057927	Metagenome	135	N
F065935	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307935_100036727	F037979	GAGG	MSFLFLGLDGEMSSSELSEGGKLIQIGVSTAECRTRSWTIDPGECQWSEQAFAVHGITRRRLSSSPSPAEVDAQLYEFLIAIGADANNRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSRRTVDLNALCFALDYKKENGMPVKAETWKKRAKAYAIEQIGAENQHDAGWDSLMHIYCFEYLRQLIKGDN
Ga0307935_10003674	F057927	GAGG	VNKDKQYQKVTNDFRQAAGLLRHDLVWSADFEAIRLDLAEYLEVKSSLGLANHLSLINIAKKLIATDNDFTI
Ga0307935_10003678	F065935	GAGG	MSVPEEINNKLYWTLGYEAGIELERERIIKVFQAKEAKRTIIEALEYPYTAQELEDTIRKGQE