NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307958_1019109

Scaffold Ga0307958_1019109


Overview

Basic Information
Taxon OID3300031214 Open in IMG/M
Scaffold IDGa0307958_1019109 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #492
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1495
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032100Metagenome181N
F074127Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0307958_10191093F074127GAGGMPTNQRQGRHWMEDPINSTPGRVNDLEKDLHNVKYRVNQLEHLPPKVSELERAISVMDTNLTHIRETGLETRNLLVELNNNQKKLIGNLEGYPGALKLFTGLIILGGVGVSVVLWFQ
Ga0307958_10191094F032100N/AACGQKHRGRDMKRHTLEERIRDETGLTVKEFTIQLGIKPAVLVRYHNSNRVMLKIILAGYRAEVRGEVIYPN

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