Scaffold Ga0307937_1013325

Overview

Basic Information

• Taxon OID: 3300031213
• Scaffold ID: Ga0307937_1013325
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2072
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001408	Metagenome	702	Y
F001814	Metagenome	630	Y
F094668	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307937_10133252	F001408	N/A	MKKIKDYFKRTRHHLHAIVGITGGFLASLALSWVWIGFRNLDALDKAILFICPAFVIGYAWERYQGIINKWDIFVSGVAISTGVYLGGLLF
Ga0307937_10133253	F001814	GAG	MSINEHKDYSKPFWVAKYEDNSVIKYGEISEGSILNTKMKIFTFSEKEDMILFVIDSGGTYIEDEIGEEVYSPDIPDS
Ga0307937_10133255	F094668	N/A	QLATGETSTTGEKFMAVYANVDSDFTVASTSGGDASFTVKLFAGGSLVGPYKNITGLTGDILCFKSDEL