NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307959_1124544

Scaffold Ga0307959_1124544


Overview

Basic Information
Taxon OID3300031212 Open in IMG/M
Scaffold IDGa0307959_1124544 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #494
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Cymopoleiavirus → Synechococcus virus SWAM2 → Synechococcus phage S-WAM2(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062483Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0307959_11245441F062483N/ASNGRVDIGDADGQSKGLVLTGNAPTITLKDTNNRSGMISMNGGNMFFLSGGANSEAWARVNGEYPLILNTASNRAQFGGQLDCDLDAFHYSAGNGGITKGTNSDVSWTSTRRGSTIQNGDSFRPKYTGKYSITLCLFFTAGSSGRVTLGLKLNGSEYNLNGGSSGTYIISAQSANRDVNMFTGNLIVDAVAGQDIKAFVKAGTLRYYGSVSYLA

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