NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307959_1036342

Scaffold Ga0307959_1036342


Overview

Basic Information
Taxon OID3300031212 Open in IMG/M
Scaffold IDGa0307959_1036342 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #494
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1538
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005137Metagenome411N
F046755Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0307959_10363421F005137N/AKPVSASSYILLATDVDKFLIFSNACTVVVPNGLAANLEFQGKQGGTGQVTFSAESGGTLNVFSEFLKETAEQHCFFGIRTDGSDVSTILGTLKLA
Ga0307959_10363423F046755N/AMKLTTNQNITNEQWKQQAERFSSIADAVNSLTFPKKDVNEMPATIEMTVVQPLSQGFKGRVVYTQQFEKIIETQREIGDTGEFETVQTPVTKQHKVVDYYETIPRD

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