Scaffold Ga0307974_1004855

Overview

Basic Information

• Taxon OID: 3300031211
• Scaffold ID: Ga0307974_1004855
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #784
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9564
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001038	Metagenome	796	Y
F008597	Metagenome	331	Y
F029619	Metagenome	187	Y
F039424	Metagenome	163	Y
F093001	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307974_100485510	F008597	N/A	MRNMIIKCHNTASVLIVQALHKGPCGANQIAYTDTGSADKLSEQGLDLRNTANKILPSWLLPKLAAHALKASSRLDTILFLPSTVCSSRVTTHNSNFQQLAKDKKLNPNQWEVRLIEFKFCEDTKPDP
Ga0307974_100485512	F039424	N/A	MCKFLGTIPLNQLQSAKVPFWNNIQTPLSKHSWGLQVIAIWNTKGRVCLNAHNKDWLIAKEIPEAKWEIQNIHNHPY
Ga0307974_100485513	F029619	GGAG	MCSEGRHGGLVGTKVLGEENGPCLLYGYEYGFVFGFLCLLLQASGCCRMDFPQGLLL
Ga0307974_100485515	F001038	N/A	THTQKDDVESNGGSLKNVAEIFVLFLCGVQLVLRSGVFTILDLAEVDVMPRFAEVFKSMLSWVGGSTGGAAGMLPVSLNFPLPL
Ga0307974_10048557	F093001	GAG	MESLSAEGPGWQVLRVSGRQAGGGSSPLACQEMDEWGWASVLMWISWPF