Scaffold Ga0307974_1003047

Overview

Basic Information

• Taxon OID: 3300031211
• Scaffold ID: Ga0307974_1003047
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #784
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11987
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4563
  • Long. (^o): 78.1898
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004364	Metagenome	441	Y
F070924	Metagenome	122	N
F071993	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307974_100304712	F004364	GAGG	MTHHTERPCAAPGLTSYRYGSIMIGATSTRDALVQADRSLTYGAASIARLEIWNAQSGLYEKVQP
Ga0307974_100304720	F071993	N/A	MSIQIDKNIPVPDESELWGNARYPWLEMNIGDSFFQKPQGSEDQKACRTRMVVGRGNRRKAHGEDYVIAYVTENGIDGVRIWKTK
Ga0307974_10030473	F070924	GGTGG	MIAMLLSSRPARWILAGLAFLGILAVARRDAARDAITEAQNDEARRYIDKRKELDNADLGIGGTDAGRIERLRAIADRNRGSGD