NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307964_1087281

Scaffold Ga0307964_1087281


Overview

Basic Information
Taxon OID3300031210 Open in IMG/M
Scaffold IDGa0307964_1087281 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #596
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018128Metagenome236Y
F041484Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0307964_10872811F041484N/AHRERWPSLDWVWDELDMLRRWQDEAVDPDDHDALETERNALSDALSEVTEQRDALSEAVRLLLEPEPDMERVHAILMGGW
Ga0307964_10872812F018128GGGGGMTDNADQAARMRDMWSAVALTSLNDAIRHASREPKKNKGRALKTLELWANSRDGRDVLRMAGIDPDKRTTDCMLAFAVKGVPCTTPRKRGVKL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.