NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307964_1006049

Scaffold Ga0307964_1006049


Overview

Basic Information
Taxon OID3300031210 Open in IMG/M
Scaffold IDGa0307964_1006049 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #596
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2978
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007290Metagenome353Y
F008859Metagenome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0307964_10060492F008859AGGAGMLYSTALSVAEHAVHTLQGNEGRMSEEEQMVAVYALAHALKAIAKHNSLEDLDDTTTKAEKESAGLDIAGINVRFFCQAWDDMNGGDYVAEIDESTFVSLGGCVTYYRTTVREHGCSQICLTTDATLEE
Ga0307964_10060495F007290AGGAMKYTIALSVAAKAATYLQDDEGSMSDEEAAFLVSTLFLALRAIAKHNSVELPPRP

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