NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307955_1086616

Scaffold Ga0307955_1086616


Overview

Basic Information
Taxon OID3300031209 Open in IMG/M
Scaffold IDGa0307955_1086616 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #439
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005769Metagenome390N
F069543Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0307955_10866161F069543N/AMQALRLRPEDTGRVSFACCYTYARILPHEVLADAGGTAAEISECWHLA
Ga0307955_10866162F005769N/AMGEMADAQREEHAGNERHLHRTTASTSAAASTQSLDTCSRRAVTKACVDAAVAQFIYATGTTFWVVVAIGK

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